Plot simulated or observed quantities — plot

Generate a ggplot2 object plotting simulated quantities over time. When sim_data is absent, quantities available directly from real-data Stan inputs are plotted instead.

Usage

plot_simulations(sim_diags, quantity)

Arguments

sim_diags: A list containing simulated diagnosis data objects sim_data and stan_data, or a real-data result containing stan_data and no sim_data.
quantity: A string specifying the quantity to plot. Options include "incidence", "undiag_prev", "undiag_migration", "all_migration", "diag_prob", "diagnoses", "migration_prob", "transfers", "transfers_detected", "ratio_abroad_uk", "detect_prob", "migrant_hiv_prevalence", "aids_diagnoses", "aids_diagnoses_age", "cd4_diagnoses", "cd4_diagnoses_age", "transfers_detected_age", "gamma_obs", "gamma_obs_group", and "recent_arrival_cd4".

Value

A ggplot2 object.

Examples

# See ?run_backcalc for a full end-to-end workflow.
invisible(NULL)